(In-House Seminar and Discussion Group)
Coordinated by Michael Q. Zhang (mzhang@cshl.edu). Contact Zhenyu Xuan (xuan@cshl.edu) in case Michael is not in.
The duration will be about one hour. The format is flexible with lunch
provided. Formally, all regular participants are listed alphabetically. You can
choose to present anything that may be "cool" or useful to the field.
For example, you could give a talk on a research project or new results,
introduce a review article, new paper or an algorithm, present a tutorial on
special topics in biology, computer science, statistics, book publication or
software licensing, etc. From time to time, we will also have talks from
visitors or other CSHL personnel who want to speak to us. You could also give a
presentation followed by open discussion. Participants are welcome to make
other suggestions on format or topics. Anyone who is not able to speak or who
would like to speak on another date should try to switch with another person.
If you need more than one session or if we insert a guest speaker, the speaker
list will automatically be shifted down. Let Paloma
Please email Paloma Anderson (anderson@cshl.edu) with a topic title as early as you can. If you wish to include a reference for a current paper or background review, you can send it later. Speaker is responsible for making sure the equipment required is in place and is working properly. (Please check the projector before the meeting. If there is a problem, call AV at x8365).
(See below for previous seminars given in this series, suggested topic links and other resources.)
| Date |
Presenter |
Topic/Paper |
6/2 |
Liao, Willey | A novel Baysian sementation model for ChIP-seq data analysis |
SUBSTITUTE
SPEAKERS |
||
| Bekritsky, Mitchell | ||
| Chia, Jer-Ming | ||
| Zhu, Prof. Wei (Stony Brook) | ||
| Wang, Prof. Jinhua (NYU) | ||
| Akerman, Martin | ||
| Erlich, Yaniv | ||
| Kolterman, Brian | ||
| Wang, Liya | ||
|
SEMINAR SERIES END - WILL BEGIN AGAIN IN THE FALL |
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PREVIOUS SEMINARS IN THIS SERIES |
|
Date |
Presenter |
Topic/Paper |
9/9 |
Shringarpure, Suyash | Detecting recent co-selection in human populations |
9/16 |
Atwal, Mickey | Statistical physics of population genetics |
9/23 |
SUTTA: Scoring-&-unfolding trimmed tree assembler | |
9/30 |
Dobin, Alex | Suffix array-based unbiased transcript reconstruction using high throughput sequencing data |
10/7 |
Evolution of parental subgenomes in the ancient tetraploid Zea mays (maize) |
|
10/14 |
Eveland, Andrea | Genome-wide digital expression signatures for maize development: an analysis framework using the first assembled reference genome |
10/21 |
Chung, Wen Yu | |
10/23 |
QB Seminar Reed, Jason - CNSI/UCLA |
Novel applications of nano-metrology in biology and medicine |
10/28 |
Feng, Xin | The landscape of D. melanogaster insulator binding proteins |
11/4 |
ZOOM: A fast and accurate short reads mapping and post-analysis software with Graphical User Interface | |
11/11 |
Mikkelsen, Tarjei - Broad Institute | Comparative epigenomics of human and murine adipogenesis |
11/18 |
Xuan, Zhenyu | Mutation detection in genome re-sequencing |
11/25 |
No Seminar - Thanksgiving | |
12/2 |
Kluger, Yuval & Parisi, Fabio - Skirball Institute, NYU | Copy number analysis in tumor biopsies |
12/9 |
Lewis, Darrin | Genomic structural variation from paired end sequencing |
12/16 |
QB Seminar Wiggins, Chris - Columbia University |
Form, function, and information processing in stochastic regulatory networks |
12/23 |
No Seminar - Christmas | |
12/30 |
No Seminar - New Year's | |
1/6 |
CANCELLED | |
1/13 |
Luo, Weijun | Generally Applicable Gene set Enrichment (GAGE) and pathway analysis |
1/20 |
McKay, Sheldon | The iPlant tree of life grand challenge |
1/27 |
TBD | |
2/3 |
Haplotype inference of copy number variations | |
2/10 |
Labwide Galaxy | |
2/17 |
Salzberg, Steven - University of Maryland | Assembling and aligning DNA sequences from next-generation sequencers |
2/24 |
QB Seminar Stolovitzky, Gustavo - IBM Research |
Systems Biology of small and large scale gene regulatory networks |
3/3 |
Parla, Jennifer | Applying array capture, Illumina sequencing, and neurobiology to the investigation of bipolar disorder |
3/10 |
Kulkarni, Jayant | Source localization for MEG using Local Basis Expansion |
3/17 |
QB Seminar Michor, Franziska - MSKCC |
Evolutionary dynamics of cancer |
3/24 |
De-novo discovery of differentially abundant transcription factor binding sites and their positional preference | |
3/31 |
Tang, Eric | Identifying methylation and copy number aberrations in breast cancer |
4/7 |
D'Eustachio, Peter | Reactome: Changing a research tool into a community resource |
4/14 |
Global probabilistic reconstruction of metabolic networks and bacterial cannibalism | |
4/21 |
Kainkaryam, Raghu - (University of Michigan) | Pooling designs for high-throughput biological experiments |
4/28 |
QB Seminar Wingreen, Ned - Princeton |
Modeling adaptation in E. coli chemotaxis: Precise, robust, and optimized |
5/5 |
Wrzeszczynski, Kaz | Epigenetic gene features of ovarian cancer |
5/12 |
SpliceTrap: A Bayesian-based quantitative method to quantify alternative splicing in high-throughput paired-end RNA-seq data | |
5/19 |
Assembling the regulatory network of the splicing factor SF2/ASF | |
5/26 |
Rosenfeld, Jeffrey - (The Zucker Hillside Hospital) | Variation in the human genome beyond SNPs |
Other Resources:
Last updated August 21, 2009